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python_cookbook [2019/01/24 14:19]
mantis [Logging to File]
python_cookbook [2019/03/05 09:50]
mantis
Line 1779: Line 1779:
 y = numpy.array([41.621207814814809,​ 42.328298238095236,​ 45.881729878787887,​ 43.800834224999996]) y = numpy.array([41.621207814814809,​ 42.328298238095236,​ 45.881729878787887,​ 43.800834224999996])
 y_smoothed = scipy.signal.cspline1d(y) y_smoothed = scipy.signal.cspline1d(y)
 +</​code>​
 +
 +===== t-test =====
 +
 +<code python>
 +from scipy import stats
 +import numpy
 +import statistics
 +
 +# http://​www.biostathandbook.com/​onesamplettest.html
 +data = [120.6, 116.4,​117.2,​118.1,​114.1,​116.9,​113.3,​121.1,​116.9,​117.0]
 +
 +m = sum(data)/​len(data)
 +
 +null_hypothesis = 120
 +
 +t_value, p_value = stats.ttest_1samp(data,​ null_hypothesis)
 +
 +print(statistics.stdev(data))
 +print(numpy.std(data,​ ddof=1))
 +
 +print(t_value,​ p_value)
 </​code>​ </​code>​
 ====== Statistical Functions ====== ====== Statistical Functions ======
Line 1832: Line 1854:
 (found in comments [[http://​programmingpraxis.com/​2012/​05/​29/​streaming-median/​|here]] - damn I hate paywalls. I'd love to read the piglet tracking paper!) (found in comments [[http://​programmingpraxis.com/​2012/​05/​29/​streaming-median/​|here]] - damn I hate paywalls. I'd love to read the piglet tracking paper!)
  
-====== ​Unit Tests ======+====== ​Testing ​====== 
 + 
 +===== unittest ===== 
   * Python 2 https://​docs.python.org/​2.7/​library/​unittest.html   * Python 2 https://​docs.python.org/​2.7/​library/​unittest.html
   * python 3 https://​docs.python.org/​3.4/​library/​unittest.html   * python 3 https://​docs.python.org/​3.4/​library/​unittest.html
   * http://​agiletesting.blogspot.com/​2005/​01/​python-unit-testing-part-1-unittest.html the nutshell   * http://​agiletesting.blogspot.com/​2005/​01/​python-unit-testing-part-1-unittest.html the nutshell
  
-===== Basics ​=====+==== Basics ====
 <code python> <code python>
 import unittest import unittest
Line 1854: Line 1879:
 </​code>​ </​code>​
  
-===== classwide Setup and teardown ​=====+==== classwide Setup and teardown ====
  
 There are two class methods that are called before/​after tests in an individual class run.  There are two class methods that are called before/​after tests in an individual class run. 
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 </​code> ​     ​ </​code> ​     ​
  
-===== Test for exceptions ​=====+==== Test for exceptions ====
  
 Since [[http://​docs.python.org/​2/​library/​unittest.html#​unittest.TestCase.assertRaises|python 2.7]] this is best done by using the context manager returned by unittest.assertRaises() Since [[http://​docs.python.org/​2/​library/​unittest.html#​unittest.TestCase.assertRaises|python 2.7]] this is best done by using the context manager returned by unittest.assertRaises()
python_cookbook.txt · Last modified: 2019/03/05 09:51 by mantis